BioJupies Generator

Ma'ayan Lab
What is BioJupies Generator?
BioJupies Generator is a Chrome extension that simplifies the process of creating, storing, and deploying Jupyter Notebooks with RNA-seq data analyses. It features an intuitive, user-friendly interface enabling users, even those with minimal programming skills, to generate customized notebooks for analyzing RNA-seq datasets. It provides data visualization, differential expression and enrichment analyses, and offers options to create custom analysis scripts. Integrating with NCBI's GEO, it even facilitates the querying of signatures against the LINCS L1000 dataset for identifying small molecules that can mimic or reverse signatures.

Extension stats

Users: 802 ▲ 7
Rating: 5.00 (4)
Version: 1.2.4 (Last updated: 2021-05-30)
Creation date: 2018-04-20
Risk impact: Low risk impact
Risk likelihood: Low risk likelihood
Manifest version: 2
Size: 154.62K

Other platforms

Not available on Firefox
Not available on Edge
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Extension summary

BioJupies Generator is a Jupyter Notebooks generator that enables users to easily create, store, and deploy Jupyter Notebooks containing RNA-seq data analyses. Through an intuitive interface, novice users can rapidly generate tailored reports to analyze RNA-seq datasets from the NCBI's gene expression omnibus (GEO). The reports contain data visualization of the samples, differential expression and enrichment analyses, and querying signatures against the LINCS L1000 dataset for small molecule that can mimic or reverse signatures. By combining an intuitive user interface for notebook generation with options to generate custom analysis scripts, BioJupies Generator addresses computational needs of both experimental and computational biologists.

User reviews

Great Idea.
by Amar Koleti, 2018-03-05
View all user reviews

Extension safety

Risk impact

BioJupies Generator requires very minimum permissions.

Risk likelihood

BioJupies Generator has earned a fairly good reputation and likely can be trusted.

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